SNPview at GNF: 10,990 SNPs genotyped in 48 mouse strains
This page provides the supplementary materials for the article:
- Pletcher MT, McClurg P, Batalov S, Su AI, Barnes SW, Lagler E, Korstanje R,
Wang X, Nusskern D, Bogue MA, Mural RJ, Paigen B, and Wiltshire T.
Use of a dense single nucleotide polymorphism map for in silico mapping in the mouse.
PLoS Biol. 2004 Nov 9; 2(12): e393.)
The GNF SNP-1 collection page provides the supplementary materials for the previous article:
The viewer allows comparing the distribution of the SNPs and SSLPs, alleles and previously
derived haplotype blocks in different regions of the mouse genome.
Several different views are available for each chromosome:
a chromatogram-style view of validated SNPs,
major and minor alleles, haplotypes, and combinations of the above.
The data for the selected strains is displayed at
the full chromosomes (or user-defined intervals), along with the interrogated SNP loci,
the reference tracks of the EntrezGene loci, publicly available SSLP markers,
and the subset of SSLP markers informative for the two selected strains.
The choice of the Celera or public genomic coordinates is available.
- Wiltshire T, Pletcher MT, Batalov S, Barnes W, Tarantino LM, Cooke MP, Wu H,
Smylie K, Santrosyan A, Copeland NG, Jenkins NA, Kalush F, Mural RJ, Glynne RJ,
Kay SA, Adams MD, and Fletcher CF.
Genome-wide single-nucleotide polymorphism analysis defines
haplotype patterns in mouse
Proc Natl Acad Sci U S A. 2003 Mar 18; 100(6): 3380-5.)
Data deposition: The SNP data have been deposited in the dbSNP,
and Mouse Genome Informatics database,
ID no. MPD:#152).
Copyright © 2003-2008 Genomics Institute of the Novartis Research Foundation. All Rights Reserved.